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Last Update: 2017-03-26T01:19:18
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Andrew Page

Repositories

  • Description: Denormalised warehouse for Sequencescape
  • Watchers: 1
  • Forks: 0
  • Language: Ruby
  • Description: Pan-genome wide association studies
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: rails 3 and 1.9.2 test
  • Watchers: 1
  • Forks: 0
  • Language: Ruby
  • Description: setup a vrtracking pipeline
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: Add audits to assets in sequencescape
  • Watchers: 1
  • Forks: 0
  • Language: Ruby
  • Description: The freezer location of a piece of labware(plate/tube)
  • Watchers: 1
  • Forks: 0
  • Language: Ruby
  • Description: A spiritual successor to Crawl
  • Watchers: 1
  • Forks: 0
  • Language: Java
  • Description: Docker containers for running MLST software
  • Watchers: 1
  • Forks: 1
  • Language: Shell
  • Description: System for tracking labware in freezers
  • Watchers: 1
  • Forks: 1
  • Language: Ruby
  • Description: National University of Ireland Maynooth Latex thesis template
  • Watchers: 1
  • Forks: 0
  • Description: Using kmers to find plasmids
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: Get a barcode for a plate
  • Watchers: 1
  • Forks: 0
  • Language: Ruby
  • Description: Ruby gem for the interacting with the sequencescape API.
  • Watchers: 1
  • Forks: 0
  • Language: Ruby
  • Description: Fast k-mer based tool for multi locus sequence typing (MLST)
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Sinatra app to translate a scanned user barcode into a username
  • Watchers: 0
  • Forks: 0
  • Language: Ruby
  • Description: Generic pipeline system
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Antibiotic Resistance Identification By Assembly
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Get assembly statistics from FASTA and FASTQ files
  • Watchers: 0
  • Forks: 0
  • Language: C++
  • Description: Perl module to take in an genomic assembly and produce annoation
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: The new Sanger Pathogen Informatics RNA Seq analysis pipeline
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: DBIC schema for pathogens tracking databases
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Display the number of delayed jobs pending
  • Watchers: 0
  • Forks: 0
  • Language: Ruby
  • Description: Python3 module to run blast+ or blastall in parallel on an LSF compute farm
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Efficiently pull filter FASTA files
  • Watchers: 0
  • Forks: 0
  • Language: C
  • Description: Addtional functionality for fastml, see http://fastml.tau.ac.il
  • Watchers: 0
  • Forks: 1
  • Language: C++
  • Description: Generate statistics on and validate fastq files
  • Watchers: 0
  • Forks: 0
  • Language: C
  • http://www.genedb.org/
  • Description: Web front-end for genomic data, developed at the Pathogen Genomics group, Wellcome Trust Sanger Institute
  • Watchers: 0
  • Forks: 1
  • Language: Java
  • Description: Convert a GFF3 file to a format acceptable for submission to EMBL
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: :beer: :penguin: Homebrew formulae for bioinformatics software only available for Linux
  • Watchers: 0
  • Forks: 0
  • Language: Ruby
  • Description: :snake: Python formulae for Homebrew
  • Watchers: 0
  • Forks: 0
  • Language: Ruby
  • Description: Modularised versions of *find scripts
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: To build a virtual machine with some Sanger pathogens software installed
  • Watchers: 0
  • Forks: 0
  • Language: Shell
  • Description: Novel sequences
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Rapid prokaryotic genome annotation
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Experiments optimising python (with Cython)
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: RAILS v1.1 and Cobbler v0.2
  • Watchers: 0
  • Forks: 0
  • Language: TeX
  • Description: A list of weak Bacterial assemblies in GenBank
  • Watchers: 0
  • Forks: 0
  • Description: Python Active-subspaces Utility Library
  • Watchers: 0
  • Forks: 0
  • Language: Jupyter Notebook