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Last Update: 2017-06-24T02:39:07
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Michael F. Covington

Repositories

  • Description: Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files
  • Watchers: 4
  • Forks: 6
  • Language: Perl
  • Description: I'm learning JavaScript and jQuery. Here are some of my mini projects for learning from tutorials, etc.
  • Watchers: 1
  • Forks: 0
  • Language: HTML
  • Description: Optimizing the pipeline for lincRNA starting from TopHat output to final lincRNA detection
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: Format expression data for COSOPT analysis, run COSOPT, and format the results.
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: Adds pretty CSS styles for the django CMS admin interface.
  • Watchers: 0
  • Forks: 0
  • Language: CSS
  • Description: A Django app for organizing data files and sets of data files within a Django site with django CMS-specific features
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: A Django app for consolidating content tagged with django-taggit tags within a Django site with django CMS-specific features
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Extract flanking positions from VCF file
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: This tool will extract a snippet of sequence upstream of where the read maps to the reference sequence.
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Tools for working with FASTA files
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Web app to simulate genetic drift in allele frequency for a single polymorphism with two alleles
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: University of Idaho Genomics Resources Core HTS Processing scripts as an R package
  • Watchers: 0
  • Forks: 0
  • Language: R
  • Description: Base files and folder structure for Jekyll
  • Watchers: 0
  • Forks: 0
  • Description: The quickest way to start and publish your Jekyll powered blog. 100% compatible with GitHub pages.
  • Watchers: 0
  • Forks: 0
  • Language: Ruby
  • Description: Make self-documenting scripts that track their own execution history
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Get free/busy data from Google Calendar
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Noise-reduction for SNPs derived from a population
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Web service for pep8 check
  • Watchers: 0
  • Forks: 0
  • Language: JavaScript
  • Description: scan a set of Perl libraries to figure out prereqs, without loading the code
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Let's automate perlbrew tasks when working with multiple versions of perl!
  • Watchers: 0
  • Forks: 0
  • Open Issues: 2
  • Language: Shell
  • Description: Find amino acid substitutions from SNPs and run PROVEAN to estimate functional severity
  • Watchers: 0
  • Forks: 2
  • Language: Perl
  • Description: Push your answers for R Club homework and exercises here!
  • Watchers: 0
  • Forks: 0
  • Description: ST2 plugin to quickly access help files with a single key stroke (HTML, CSS, JavaScript, PHP, Python, Ruby, R, and Stata)
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: My package settings, etc. for Sublime Text 2
  • Watchers: 0
  • Forks: 0
  • Description: Utilities for *nix
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Split a bam file based on run/lane info
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Merge population's bam files based on genotypic bins to create parental genotype bam files
  • Watchers: 0
  • Forks: 0
  • Description: Course Website for UC Davis BIS180L
  • Watchers: 0
  • Forks: 0
  • Language: HTML
  • Description: Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
  • Watchers: 0
  • Forks: 0
  • Language: C
  • Description: Finds potential sites for CAPS markers.
  • Watchers: 0
  • Forks: 2
  • Language: Perl
  • Description: A collection of code snippets, notes, etc. for various languages
  • Watchers: 0
  • Forks: 0
  • Description: Build and write coverage profiles
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Notes, documents, and scripts relating to setting up a debian-based lab server
  • Watchers: 0
  • Forks: 0
  • http://django-autocomplete-light.rtfd.org
  • Description: A fresh approach to autocomplete implementations, specially for Django. It supports templated autocompletes, foreign key, many to many, generic foreign key, generic many to many, autocompletes that depend on each other, etc, etc ... Status: 2.x.x stable, 1.x.x deprecated. PLEASE DO BUMP your github pull requests !!!
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Bootstrap 3 integration with Django.
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Django app for assigning and tracking lab chores for scientists in a lab
  • Watchers: 0
  • Forks: 0
  • Description: Exploring loose coupling of apps with generic m2m relationships
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Python application for "Experimental High Throughput Sequencing"
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: This is a collection of scripts that people have asked me to troubleshoot and fix. If all goes according to plan, each person will be a separate branch (with branching from and merging to that person's branch occurring when they send me an additional script).
  • Watchers: 0
  • Forks: 0
  • Description: A command-line based markdown presentation tool.
  • Watchers: 0
  • Forks: 0