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Last Update: 2017-05-25T00:38:48
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Ryan C. Thompson

Repositories

  • Description: Fancy completion all over Emacs, not just for buffers and files.
  • Watchers: 147
  • Forks: 25
  • Open Issues: 3
  • Language: Emacs Lisp
  • Description: Emacs daemon mode that plays nice with Mac OS X.
  • Watchers: 12
  • Forks: 6
  • Language: Emacs Lisp
  • Description: Use ido to answer yes or no questions.
  • Watchers: 11
  • Forks: 2
  • Language: Emacs Lisp
  • Description: My Emacs Configuration
  • Watchers: 7
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Modify environment variables in a running screen or tmux session
  • Watchers: 7
  • Forks: 1
  • Language: Python
  • Description: Automate common sam & bam conversions
  • Watchers: 6
  • Forks: 1
  • Language: Python
  • Description: Copy specific files after building (for SCM inclusion, etc.)
  • Watchers: 5
  • Forks: 4
  • Language: Perl
  • Description: Alternate completing-read-multiple that uses completing-read
  • Watchers: 4
  • Forks: 2
  • Language: Emacs Lisp
  • Description: Guess the quality encoding system used by FASTQ sequence files.
  • Watchers: 4
  • Forks: 2
  • Language: Python
  • Description: Transfer and transcode your music at the same time
  • Watchers: 4
  • Forks: 1
  • Language: Python
  • Description: Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
  • Watchers: 3
  • Forks: 1
  • Language: R
  • Description: My extra github commands
  • Watchers: 3
  • Forks: 0
  • Language: Perl
  • Description: Indent and dedent Lisp code, automatically adjust close parens
  • Watchers: 2
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Powerful GitHub Helper Utility in Perl.
  • Watchers: 2
  • Forks: 0
  • Language: Perl
  • Description: Bioconductor facilities for parallel evaluation (experimental)
  • Watchers: 2
  • Forks: 0
  • Language: R
  • Description: My scripts for munging, merging, and archiving OFX files
  • Watchers: 2
  • Forks: 1
  • Open Issues: 1
  • Language: Perl
  • Description: Ensure that POD has no duplicate section headers.
  • Watchers: 2
  • Forks: 2
  • Language: Perl
  • Description: Add a standard DISCLAIMER OF WARRANTY section (for your Perl module)
  • Watchers: 2
  • Forks: 1
  • Language: Perl
  • Description: A fill-in-the-blank template for writing Python command-line scripts with easy option parsing
  • Watchers: 2
  • Forks: 0
  • Language: Python
  • Description: Emacs smooth scrolling package
  • Watchers: 2
  • Forks: 0
  • Language: Emacs Lisp
  • Description: ack.el + full-ack.el = ack-and-a-half.el (Yet another emacs front-end to ack)
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: perl framework for testable, extensible command line apps
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: A tool to make it easier to manage multiple code repositories using different VCSen
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: Public release of most of the data analysis code for Lamere et. al. 2016
  • Watchers: 1
  • Forks: 0
  • Language: R
  • Description: cperl-mode with 5.10 fixes, mx-declare support, perl6 support, etc.
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: RTHOMPSON's Dist::Zilla Configuration
  • Watchers: 1
  • Forks: 2
  • Language: Perl
  • Description: My Emacs configuration (contents of ~/.emacs.d/)
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Because the Emacs defaults are not so great sometimes.
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: diffuse domain ChIP-Seq caller based on SICER
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: A quarantine for incomplete output files
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: Perl module to Provide an open3 function with the same syntax as system
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • http://kaizer.se/wiki/kupfer/
  • Description: kupfer, smart, quick launcher. `master' is kupfer's release branch and tracks the main repository at http://git.gnome.org/browse/kupfer/ — All topic branches are Works in Progress and might be rebased. Kupfer Technical Documentation: http://kaizer.se/wiki/kupfer/Manual.html [[Send email, not pull requests. Email <kupfer-list - gnome.org> (or me)]]
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: A perl module for flattening lists of lists of lists of lists of ...
  • Watchers: 1
  • Forks: 1
  • Open Issues: 1
  • Language: Perl
  • Description: It's Magit! An Emacs mode for Git.
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Magit + GitHub
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Scripts for building Emacs packages from Version Control
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Generate playlists from special music tags
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: Easily set up shell pipelines in Python
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: recombine pod documents into awesomer pod documents
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: A bundle that implements RTHOMPSON's preferred Pod::Weaver config
  • Watchers: 1
  • Forks: 1
  • Language: Perl
  • Description: A ChiliProject/Redmine plugin which makes configuring your own git hosting easy.
  • Watchers: 1
  • Forks: 0
  • Language: Ruby
  • Description: Scripts to build my resume and supporting files
  • Watchers: 1
  • Forks: 0
  • Language: HTML
  • Description: A dice-rolling simulator for RPGs
  • Watchers: 1
  • Forks: 1
  • Language: Python
  • Description: My ~/.Rprofile
  • Watchers: 1
  • Forks: 0
  • Language: Shell
  • Description: Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
  • Watchers: 1
  • Forks: 0
  • Language: C
  • Description: Improved multi-sample transcript abundance estimates using adaptive priors
  • Watchers: 1
  • Forks: 0
  • Language: C++
  • Description: A smart M-x enhancement for Emacs.
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Split a SAM file into nonoverlapping read groups
  • Watchers: 1
  • Forks: 0
  • Language: Python
  • Description: Add colors to DNA and RNA sequences in terminal output
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: Perl module to provide a csv parser with options specified on the command-line
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: Minor mode for visual feedback on some operations in Emacs.
  • Watchers: 1
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Extract data from multi-sheet Excel spreadsheets into CSV files
  • Watchers: 1
  • Forks: 0
  • Language: Perl
  • Description: Automagically pair braces and quotes in emacs like TextMate
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: A curated list of amazingly awesome open source sysadmin resources inspired by Awesome PHP.
  • Watchers: 0
  • Forks: 0
  • Description: adjust for cell-type composition in 450K data using houseman's and other methods.
  • Watchers: 0
  • Forks: 0
  • Language: R
  • Description: Extract License, Author and Copyright from .pm file
  • Watchers: 0
  • Forks: 0
  • Language: Perl
  • Description: Plyr specialised for data frames: faster & with remote datastores
  • Watchers: 0
  • Forks: 0
  • Language: C++
  • Description: Simple library for asynchronous processing in Emacs
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: noflet - nic's overriding flet, for fleting functions for the purpose of decorating them
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Opinionated Ert testing workflow
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: ESUP - Emacs Start Up Profiler
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.
  • Watchers: 0
  • Forks: 0
  • Language: R
  • Description: Fork and clone Github projects from Emacs
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Protect against clobbering user-writable files in Emacs
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Workflow to download/generate various mapping indices for the human hg38 genome
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: [emacs] highlight staged (quasi-quoted) expressions
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Make ido completes like built-in M-x does, useful when use smex or use ido to complete other hyphen separated choises
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: Speed improvements for Emacs ido-mode-el
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: losslessly convert images to pdf
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Generate Markdown-formatted READMEs from your Emacs Lisp file headers.
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: The MacOS X kernel extension, preventing sleep when you close the lid.
  • Watchers: 0
  • Forks: 0
  • Language: Objective-C
  • Description: A package management tool for Emacs, built on Cask.
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: A multi format image optimizer that uses external tools
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Emacs minor mode for drawing multi-character tokens as Unicode glyphs (lambda -> λ). A configurable replacement for pretty-mode and the like.
  • Watchers: 0
  • Forks: 0
  • Language: Emacs Lisp
  • Description: for those times you want to make plots with candy-themed color schemes
  • Watchers: 0
  • Forks: 0
  • Description: Wrapper for R string functions to make them more consistent, simpler and easier to use
  • Watchers: 0
  • Forks: 0
  • Language: R
  • Description: Collection of library stubs for Python, with static types
  • Watchers: 0
  • Forks: 0
  • Language: Python
  • Description: Unobtrusively trim extraneous white-space *ONLY* in lines edited.
  • Watchers: 0
  • Forks: 0
  • Description: A portable, performant script to make rolling ZFS snapshots easy.
  • Watchers: 0
  • Forks: 0
  • Language: Shell