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Last Update: 2018-11-10T20:19:53
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Christopher Fields

Repositories

  • Description: An experimental Moose-based BioPerl implementation
  • Stars: 28
  • Forks: 8
  • Open Issues: 1
  • Language: Perl
  • http://biolib.open-bio.org/
  • Description: BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages
  • Stars: 4
  • Forks: 0
  • Language: C
  • Description: Perl XS bindings to klib's kseq.h
  • Stars: 3
  • Forks: 1
  • Language: C
  • Description: Visualize Graph.pm data in SVG
  • Stars: 2
  • Forks: 1
  • Language: Perl
  • Description: Fast multi-line FASTA/Q reader in several programming languages
  • Stars: 2
  • Forks: 0
  • Language: C
  • Description: A tiny package manager for crucial unix and bioinformatics tools
  • Stars: 2
  • Forks: 0
  • Language: Shell
  • Description: Generic streams for BioPerl parsing
  • Stars: 2
  • Forks: 0
  • Language: Perl
  • Description: Perl6 binding to samtools
  • Stars: 1
  • Forks: 0
  • Language: Perl6
  • Description: Perl6 NativeCall bindings to htslib
  • Stars: 1
  • Forks: 0
  • Language: Perl6
  • Description: My Dist::Zilla plugin bundle (or bungle, depending on how you look at it)
  • Stars: 1
  • Forks: 0
  • Language: Perl
  • Description: submodule test for bioperl repos
  • Stars: 1
  • Forks: 0
  • Description: Source for the CPAN Bio::DB::HTS module. Perl adaptors into the HTSlib library.
  • Stars: 1
  • Forks: 1
  • Language: Perl
  • Description: Toolkit to analyze genomic variation data, built on the GATK with Clojure
  • Stars: 1
  • Forks: 0
  • Language: Clojure
  • Description: API and toolkit for reading, writing, and manipulating BAM (genome alignment) files
  • Stars: 1
  • Forks: 0
  • Language: C++
  • Description: Tools for working with SAM/BAM data (development suspended until July)
  • Stars: 0
  • Forks: 0
  • Language: D
  • Description: Scripts to migrate redmine tickets to github issues
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: Reads issues from a redmine API XML and adds them to a github repository.
  • Stars: 0
  • Forks: 1
  • Language: Python
  • Description: Perl 6 module management solution, -Ofun
  • Stars: 0
  • Forks: 0
  • Language: Perl6
  • Description: Simple implementation of File::Temp for creating temporary files
  • Stars: 0
  • Forks: 0
  • Description: Bcrypt password hashing in Perl6
  • Stars: 0
  • Forks: 0
  • Language: C
  • Description: An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: in-memory k-mer counting
  • Stars: 0
  • Forks: 0
  • Language: C
  • Description: test bioperl issue migration
  • Stars: 0
  • Forks: 0
  • Description: Plos in Computational Biology paper related with github for researchers, code, source and document
  • Stars: 0
  • Forks: 0
  • Language: Jupyter Notebook
  • Description: GenomeDiff (*.gd) file parser for Python
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: The Leek group guide to data sharing
  • Stars: 0
  • Forks: 0
  • Description: Temp repo for Data Science Toolbox course
  • Stars: 0
  • Forks: 0
  • Description: Lexical loading bug?
  • Stars: 0
  • Forks: 0
  • Language: Perl6
  • Description: Tools for bioinformatics
  • Stars: 0
  • Forks: 0
  • Description: Moose-based Bio::Root bridge classes (testing for BioPerl)
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: General BioPerl modules for PacBio-related tools (EXPERIMENTAL)
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Tools for working with second gen assemblies, fasta sequences, etc
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
  • Stars: 0
  • Forks: 0
  • Language: Perl