Repositories
- Description: An experimental Moose-based BioPerl implementation
- Stars: 27
- Forks: 8
- Open Issues: 1
- Language: Perl
- http://biolib.open-bio.org/
- Description: BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages
- Stars: 4
- Forks: 0
- Language: C
- Description: Perl XS bindings to klib's kseq.h
- Stars: 3
- Forks: 1
- Language: C
- Description: Fast multi-line FASTA/Q reader in several programming languages
- Stars: 3
- Forks: 0
- Language: C
- Description: Generic streams for BioPerl parsing
- Stars: 2
- Forks: 0
- Language: Perl
- Description: A tiny package manager for crucial unix and bioinformatics tools
- Stars: 2
- Forks: 0
- Language: Shell
- Description: An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
- Stars: 2
- Forks: 0
- Language: Perl
- Description: Perl6 NativeCall bindings to htslib
- Stars: 2
- Forks: 0
- Language: Perl6
- Description: Visualize Graph.pm data in SVG
- Stars: 2
- Forks: 1
- Language: Perl
- Description: Tools for working with second gen assemblies, fasta sequences, etc
- Stars: 1
- Forks: 0
- Language: Perl
- Description: API and toolkit for reading, writing, and manipulating BAM (genome alignment) files
- Stars: 1
- Forks: 0
- Language: C++
- Description: Toolkit to analyze genomic variation data, built on the GATK with Clojure
- Stars: 1
- Forks: 0
- Language: Clojure
- Description: Source for the CPAN Bio::DB::HTS module. Perl adaptors into the HTSlib library.
- Stars: 1
- Forks: 1
- Language: Perl
- Description: Moose-based Bio::Root bridge classes (testing for BioPerl)
- Stars: 1
- Forks: 0
- Language: Perl
- Description: Tools for bioinformatics
- Stars: 1
- Forks: 0
- Description: submodule test for bioperl repos
- Stars: 1
- Forks: 0
- Description: Lexical loading bug?
- Stars: 1
- Forks: 0
- Language: Perl6
- Description: Temp repo for Data Science Toolbox course
- Stars: 1
- Forks: 0
- Description: My Dist::Zilla plugin bundle (or bungle, depending on how you look at it)
- Stars: 1
- Forks: 0
- Language: Perl
- Description: GenomeDiff (*.gd) file parser for Python
- Stars: 1
- Forks: 0
- Language: Python
- Description: Plos in Computational Biology paper related with github for researchers, code, source and document
- Stars: 1
- Forks: 0
- Language: Jupyter Notebook
- Description: Perl6 binding to samtools
- Stars: 1
- Forks: 0
- Language: Perl6
- Description: Bcrypt password hashing in Perl6
- Stars: 1
- Forks: 0
- Language: C
- Description: Simple implementation of File::Temp for creating temporary files
- Stars: 1
- Forks: 0
- Description: Perl 6 module management solution, -Ofun
- Stars: 1
- Forks: 0
- Language: Perl6
- Description: Scripts to migrate redmine tickets to github issues
- Stars: 1
- Forks: 0
- Language: Python
- Description: Tools for working with SAM/BAM data (development suspended until July)
- Stars: 1
- Forks: 1
- Language: D
- Description: An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
- Stars: 0
- Forks: 0
- Language: Perl
- Description: General BioPerl modules for PacBio-related tools (EXPERIMENTAL)
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/
- Stars: 0
- Forks: 0
- Open Issues: 1
- Description: The Leek group guide to data sharing
- Stars: 0
- Forks: 0
- Description: test bioperl issue migration
- Stars: 0
- Forks: 0
- Description: in-memory k-mer counting
- Stars: 0
- Forks: 0
- Language: C
- Description: Official documents of the Open Bioinformatics Foundation
- Stars: 0
- Forks: 0
- Language: HTML
- http://joey711.github.io/phyloseq/
- Description: phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
- Stars: 0
- Forks: 0
- Description: Reads issues from a redmine API XML and adds them to a github repository.
- Stars: 0
- Forks: 1
- Language: Python
- Description: samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.
- Stars: 0
- Forks: 0
- Description: Short-lived repo to test actions
- Stars: 0
- Forks: 0
