- On MetaCPAN: https://metacpan.org/author/CJFIELDS
- On GitHub: https://github.com/cjfields
- Blog: bioperl.org
- Rank: 177
- Followers: 102
- Public Repos: 48
- Public Gists: 47
- Languages:
- D (1)
- Perl 6 (1)
- Clojure (1)
- Python (4)
- Groovy (1)
- Jupyter Notebook (1)
- C++ (3)
- C (9)
- Perl (15)
- Shell (1)
- Perl6 (4)
- Ruby (1)
- Location: University of Illinois UC
- Company: @HPCBio @NCSA-Open @bioperl
Repositories
- http://bioperl.org
- Description: reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
- Stars: 49
- Forks: 11
- Open Issues: 2
- Language: Perl 6
- Description: An experimental Moose-based BioPerl implementation
- Stars: 26
- Forks: 8
- Open Issues: 1
- Language: Perl
- http://bioperl.org
- Description: A reimplementation of BioPerl's Primer3-related code for primer3 v1 and v2
- Stars: 9
- Forks: 5
- Open Issues: 7
- Language: Perl
- http://biolib.open-bio.org/
- Description: BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages
- Stars: 4
- Forks: 0
- Language: C
- http://pbwa.sourceforge.net
- Description: Parallel bwa implementation
- Stars: 3
- Forks: 1
- Open Issues: 3
- Language: C
- Description: Low level biological data parsers
- Stars: 2
- Forks: 0
- Open Issues: 4
- Language: Perl
- http://github.com/gugod/ActiveResource
- Description: The Perl implementation of ActiveResource
- Stars: 1
- Forks: 0
- Language: Perl
- http://code.google.com/p/bedtools/
- Description: A flexible suite of utilities for genome arithmetic. That is, set theory on genomic features.
- Stars: 1
- Forks: 0
- Language: C++
- http://search.cpan.org/dist/Bio-GFF3
- Description: fast, low-level GFF3 manipulation in Perl
- Stars: 1
- Forks: 0
- Language: Perl
- http://mentalized.net/journal/2009/08/03/redmine_plugin_github_hook/
- Description: Allow your Redmine installation to be notified when changes have been pushed to a Github repository.
- Stars: 1
- Forks: 0
- Language: Ruby
- http://rrwick.github.io/Bandage/
- Description: a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
- Stars: 0
- Forks: 0
- Language: C++
- http://www.commonwl.org
- Description: Repository for CWL Specifications. Use https://www.biostars.org/t/cwl/ for support.
- Stars: 0
- Forks: 0
- Language: Python
- http://homes.cs.washington.edu/~dcjones/fastq-tools/
- Description: Small utilities for working with fastq sequence files.
- Stars: 0
- Forks: 0
- Language: C
- https://ngisweden.scilifelab.se/
- Description: Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
- Stars: 0
- Forks: 0
- Language: Groovy
- http://samtools.sourceforge.net
- Stars: 0
- Forks: 0
- Language: C