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Last Update: 2018-11-10T20:19:53
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Michael F. Covington

Repositories

  • Description: Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files
  • Stars: 6
  • Forks: 10
  • Language: Perl
  • Description: Find amino acid substitutions from SNPs and run PROVEAN to estimate functional severity
  • Stars: 1
  • Forks: 2
  • Language: Perl
  • Description: I'm learning JavaScript and jQuery. Here are some of my mini projects for learning from tutorials, etc.
  • Stars: 1
  • Forks: 0
  • Language: HTML
  • Description: Format expression data for COSOPT analysis, run COSOPT, and format the results.
  • Stars: 1
  • Forks: 0
  • Language: Perl
  • Description: RNAseq workshop
  • Stars: 0
  • Forks: 0
  • Language: R
  • Description: My package settings, etc. for Sublime Text 2
  • Stars: 0
  • Forks: 0
  • Description: ST2 plugin to quickly access help files with a single key stroke (HTML, CSS, JavaScript, PHP, Python, Ruby, R, and Stata)
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: Push your answers for R Club homework and exercises here!
  • Stars: 0
  • Forks: 0
  • Description: Proxa: A Protocols.io skill for Amazon's Alexa
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: Let's automate perlbrew tasks when working with multiple versions of perl!
  • Stars: 0
  • Forks: 0
  • Open Issues: 2
  • Language: Shell
  • Description: scan a set of Perl libraries to figure out prereqs, without loading the code
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Web service for pep8 check
  • Stars: 0
  • Forks: 0
  • Language: JavaScript
  • Description: Noise-reduction for SNPs derived from a population
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Get free/busy data from Google Calendar
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: A command-line based markdown presentation tool.
  • Stars: 0
  • Forks: 0
  • Description: Make self-documenting scripts that track their own execution history
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Optimizing the pipeline for lincRNA starting from TopHat output to final lincRNA detection
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: The quickest way to start and publish your Jekyll powered blog. 100% compatible with GitHub pages.
  • Stars: 0
  • Forks: 0
  • Language: Ruby
  • Description: A jekyll starting point.
  • Stars: 0
  • Forks: 0
  • Description: Base files and folder structure for Jekyll
  • Stars: 0
  • Forks: 0
  • Description: Ethereum dApp to sell celestial objects
  • Stars: 0
  • Forks: 0
  • Language: JavaScript
  • Description: University of Idaho Genomics Resources Core HTS Processing scripts as an R package
  • Stars: 0
  • Forks: 0
  • Language: R
  • Description: Web app to simulate genetic drift in allele frequency for a single polymorphism with two alleles
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: This is a collection of scripts that people have asked me to troubleshoot and fix. If all goes according to plan, each person will be a separate branch (with branching from and merging to that person's branch occurring when they send me an additional script).
  • Stars: 0
  • Forks: 0
  • Description: Tools for working with FASTA files
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: This tool will extract a snippet of sequence upstream of where the read maps to the reference sequence.
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Extract flanking positions from VCF file
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Python application for "Experimental High Throughput Sequencing"
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: A Django app for consolidating content tagged with django-taggit tags within a Django site with django CMS-specific features
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: A Django app for organizing data files and sets of data files within a Django site with django CMS-specific features
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: Adds pretty CSS styles for the django CMS admin interface.
  • Stars: 0
  • Forks: 0
  • Language: CSS
  • Description: Exploring loose coupling of apps with generic m2m relationships
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: Django app for assigning and tracking lab chores for scientists in a lab
  • Stars: 0
  • Forks: 0
  • Description: Bootstrap 3 integration with Django.
  • Stars: 0
  • Forks: 0
  • Language: Python
  • http://django-autocomplete-light.rtfd.org
  • Description: A fresh approach to autocomplete implementations, specially for Django. It supports templated autocompletes, foreign key, many to many, generic foreign key, generic many to many, autocompletes that depend on each other, etc, etc ... Status: 2.x.x stable, 1.x.x deprecated. PLEASE DO BUMP your github pull requests !!!
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: Notes, documents, and scripts relating to setting up a debian-based lab server
  • Stars: 0
  • Forks: 0
  • Description: Build and write coverage profiles
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: An easy to use framework to build Nested Containerized Workflows
  • Stars: 0
  • Forks: 0
  • Description: A collection of code snippets, notes, etc. for various languages
  • Stars: 0
  • Forks: 0
  • Description: Finds potential sites for CAPS markers.
  • Stars: 0
  • Forks: 2
  • Language: Perl
  • Description: Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
  • Stars: 0
  • Forks: 0
  • Language: C
  • Description: Course Website for UC Davis BIS180L
  • Stars: 0
  • Forks: 0
  • Language: HTML
  • Description: Merge population's bam files based on genotypic bins to create parental genotype bam files
  • Stars: 0
  • Forks: 0
  • Description: Split a bam file based on run/lane info
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Utilities for *nix
  • Stars: 0
  • Forks: 0
  • Language: Perl