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Last Update: 2020-08-10T08:32:50
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Andrea Telatin 🧬

Repositories

  • Description: covtobed | Convert the coverage track from a BAM file into a BED file
  • Stars: 16
  • Forks: 2
  • Open Issues: 3
  • Language: C++
  • Description: Misc scripts for routine bioinformatics tasks. Plus some Perl modules.
  • Stars: 2
  • Forks: 0
  • Language: Perl
  • Description: Tools to deal with Illumina NextSeq500 sequences
  • Stars: 2
  • Forks: 0
  • Language: Perl
  • Description: Exploring NIM
  • Stars: 2
  • Forks: 0
  • Language: Nim
  • Description: Repository of utilities for Qiime2. Experimental
  • Stars: 2
  • Forks: 0
  • Language: Perl
  • Description: Like 'tee', but for PasteBin.com
  • Stars: 2
  • Forks: 0
  • Language: Perl
  • Description: [FASTX::Reader] Perl module to parse FASTQ files, without depending on BioPerl
  • Stars: 1
  • Forks: 0
  • Language: Perl
  • Description: Tutorial on 16S analysis using the Lotus pipeline
  • Stars: 1
  • Forks: 0
  • Language: Shell
  • Description: An example of 16S analysis using VSEARCH
  • Stars: 1
  • Forks: 1
  • Language: Shell
  • Description: Align sequences to detect the variable regions they span
  • Stars: 0
  • Forks: 1
  • Language: Perl
  • Description: Comparative TraDIS analysis
  • Stars: 0
  • Forks: 0
  • Description: AmpliCoriuS - Amplicon Core Scripts
  • Stars: 0
  • Forks: 0
  • Language: Shell
  • Description: A pipeline for bioinformatics analysis of bacterial genomes
  • Stars: 0
  • Forks: 0
  • Description: The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
  • Stars: 0
  • Forks: 0
  • Language: C
  • Description: Perl module to convert Sanger traces (chromatograms) to FASTQ
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Easy TOC creation for GitHub README.md
  • Stars: 0
  • Forks: 0
  • Description: Bioinformatics training - Gut Microbes and Health program at the Quadram Institute Bioscience
  • Stars: 0
  • Forks: 0
  • Description: GraphBin: Refined binning of metagenomic contigs using assembly graphs
  • Stars: 0
  • Forks: 0
  • Description: A command-line tool for exporting data from IRIDA to the command line
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Perl Module storing IUPAC DNA encoding
  • Stars: 0
  • Forks: 0
  • Description: least common ancestor evaluation given tax database and
  • Stars: 0
  • Forks: 0
  • Language: C++
  • Description: Scripts used for Bash/Perl training sessions
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: 𝙉𝙂𝙎 𝘽𝙞𝙤𝙞𝙣𝙛𝙤𝙧𝙢𝙖𝙩𝙞𝙘𝙨 ▶ Toolkit to assist overlapping 𝐩𝐚𝐢𝐫 𝐞𝐧𝐝𝐬 reads merging
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Resequencing of plasmids from miniprep using NGS
  • Stars: 0
  • Forks: 0
  • Description: [Prokka fork] Rapid prokaryotic genome annotation
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Misc Python3 scripts
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: Sequence file uploader for IRIDA
  • Stars: 0
  • Forks: 0
  • Language: Python
  • Description: Quadram Institute MetaBarcoding Analyses
  • Stars: 0
  • Forks: 0
  • Description: Rarefaction scripts
  • Stars: 0
  • Forks: 0
  • Language: C++
  • Description: Fast multi-line FASTA/Q reader in several programming languages
  • Stars: 0
  • Forks: 0
  • Language: C
  • Description: Fast tool for sequence related tasks
  • Stars: 0
  • Forks: 0
  • Language: C++
  • Description: Supertree estimation from gene trees to species trees. Using distance minimisation (centroid trees), matrix representation with parsimony, and matrix representation with distances.
  • Stars: 0
  • Forks: 0
  • Language: Shell
  • Description: Lightning talk for The Perl and Raku Conference in the Cloud
  • Stars: 0
  • Forks: 0
  • Description: trace2snps - a tool to batch validate NGS variants using Sanger sequencing
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Markdown documentation for USEARCH 11 (see drive5.com for offical docs)
  • Stars: 0
  • Forks: 0
  • Language: Perl
  • Description: Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
  • Stars: 0
  • Forks: 0
  • Language: Perl