Repositories
- Description: Fancy completion all over Emacs, not just for buffers and files.
- Stars: 236
- Forks: 34
- Open Issues: 2
- Language: Emacs Lisp
- Description: An alternative M-x interface for Emacs.
- Stars: 111
- Forks: 12
- Open Issues: 4
- Language: Emacs Lisp
- Description: Emacs daemon mode that plays nice with Mac OS.
- Stars: 41
- Forks: 8
- Language: Emacs Lisp
- Description: Test your interactive elisp functions non-interactively!
- Stars: 31
- Forks: 4
- Open Issues: 4
- Language: Emacs Lisp
- Description: A script for adding replaygain tags to music files
- Stars: 26
- Forks: 4
- Open Issues: 1
- Language: Python
- Description: Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
- Stars: 16
- Forks: 1
- Language: R
- Description: Use ido to answer yes or no questions.
- Stars: 14
- Forks: 2
- Open Issues: 2
- Language: Emacs Lisp
- Description: Modify environment variables in a running screen or tmux session
- Stars: 10
- Forks: 1
- Language: Python
- Description: Simplified timer management for Emacs Lisp
- Stars: 9
- Forks: 2
- Language: Emacs Lisp
- Description: Alternate completing-read-multiple that uses completing-read
- Stars: 8
- Forks: 2
- Open Issues: 3
- Language: Emacs Lisp
- Description: Transfer and transcode your music at the same time
- Stars: 8
- Forks: 3
- Open Issues: 2
- Language: Python
- Description: My Emacs Configuration
- Stars: 6
- Forks: 0
- Language: Emacs Lisp
- Description: Download your subscribed videos from Youtube
- Stars: 6
- Forks: 4
- Language: Shell
- Description: Make ido completes like built-in M-x does, useful when use smex or use ido to complete other hyphen separated choises
- Stars: 6
- Forks: 2
- Language: Emacs Lisp
- Description: Automate common sam & bam conversions
- Stars: 6
- Forks: 1
- Language: Python
- Description: A command-line dice-rolling simulator for RPGs
- Stars: 6
- Forks: 2
- Language: Python
- Description: Copy specific files after building (for SCM inclusion, etc.)
- Stars: 5
- Forks: 4
- Language: Perl
- Description: My extra github commands
- Stars: 5
- Forks: 1
- Language: Perl
- Description: A perl module for flattening lists of lists of lists of lists of ...
- Stars: 5
- Forks: 2
- Open Issues: 2
- Language: Perl
- Description: Indent and dedent Lisp code, automatically adjust close parens
- Stars: 4
- Forks: 0
- Language: Emacs Lisp
- Description: My Emacs configuration (contents of ~/.emacs.d/)
- Stars: 4
- Forks: 0
- Open Issues: 2
- Language: Emacs Lisp
- Description: Guess the quality encoding system used by FASTQ sequence files.
- Stars: 4
- Forks: 2
- Open Issues: 1
- Language: Python
- Description: Automatically convert POD to a README for Dist::Zilla
- Stars: 3
- Forks: 10
- Open Issues: 2
- Language: Perl
- Description: My scripts for munging, merging, and archiving OFX files
- Stars: 3
- Forks: 1
- Open Issues: 1
- Language: Perl
- Description: Powerful GitHub Helper Utility in Perl.
- Stars: 2
- Forks: 0
- Language: Perl
- Description: Bioconductor facilities for parallel evaluation (experimental)
- Stars: 2
- Forks: 0
- Language: R
- Description: Public release of most of the data analysis code for Lamere et. al. 2016
- Stars: 2
- Forks: 0
- Language: R
- Description: Generate playlists from special music tags
- Stars: 2
- Forks: 0
- Language: Python
- Description: Ensure that POD has no duplicate section headers.
- Stars: 2
- Forks: 2
- Language: Perl
- Description: Add a standard DISCLAIMER OF WARRANTY section (for your Perl module)
- Stars: 2
- Forks: 1
- Language: Perl
- Description: A fill-in-the-blank template for writing Python command-line scripts with easy option parsing
- Stars: 2
- Forks: 0
- Language: Python
- Description: My ~/.Rprofile
- Stars: 2
- Forks: 0
- Language: Shell
- Description: Emacs smooth scrolling package
- Stars: 2
- Forks: 0
- Language: Emacs Lisp
- Description: Extract data from multi-sheet Excel spreadsheets into CSV files
- Stars: 2
- Forks: 0
- Language: Perl
- Description: ack.el + full-ack.el = ack-and-a-half.el (Yet another emacs front-end to ack)
- Stars: 1
- Forks: 0
- Language: Emacs Lisp
- Description: perl framework for testable, extensible command line apps
- Stars: 1
- Forks: 0
- Language: Perl
- Description: A tool to make it easier to manage multiple code repositories using different VCSen
- Stars: 1
- Forks: 0
- Language: Perl
- Description: cperl-mode with 5.10 fixes, mx-declare support, perl6 support, etc.
- Stars: 1
- Forks: 0
- Language: Emacs Lisp
- Description: RTHOMPSON's Dist::Zilla Configuration
- Stars: 1
- Forks: 2
- Language: Perl
- Description: Functions for manipulating Emacs file locks programmatically
- Stars: 1
- Forks: 1
- Language: Emacs Lisp
- Description: Because the Emacs defaults are not so great sometimes.
- Stars: 1
- Forks: 0
- Language: Emacs Lisp
- Description: diffuse domain ChIP-Seq caller based on SICER
- Stars: 1
- Forks: 0
- Language: Python
- Description: Workflow to download/generate various mapping indices for the human hg38 genome
- Stars: 1
- Forks: 0
- Language: Python
- Description: A quarantine for incomplete output files
- Stars: 1
- Forks: 0
- Language: Python
- Description: Perl module to Provide an open3 function with the same syntax as system
- Stars: 1
- Forks: 0
- Language: Perl
- http://kaizer.se/wiki/kupfer/
- Description: kupfer, smart, quick launcher. `master' is kupfer's release branch and tracks the main repository at http://git.gnome.org/browse/kupfer/ — All topic branches are Works in Progress and might be rebased. Kupfer Technical Documentation: http://kaizer.se/wiki/kupfer/Manual.html [[Send email, not pull requests. Email <kupfer-list - gnome.org> (or me)]]
- Stars: 1
- Forks: 0
- Language: Python
- Description: It's Magit! An Emacs mode for Git.
- Stars: 1
- Forks: 0
- Language: Emacs Lisp
- Description: Magit + GitHub
- Stars: 1
- Forks: 0
- Language: Emacs Lisp
- Description: Scripts for building Emacs packages from Version Control
- Stars: 1
- Forks: 0
- Language: Emacs Lisp
- Description: Easily set up shell pipelines in Python
- Stars: 1
- Forks: 0
- Language: Python
- Description: recombine pod documents into awesomer pod documents
- Stars: 1
- Forks: 0
- Language: Perl
- Description: A bundle that implements RTHOMPSON's preferred Pod::Weaver config
- Stars: 1
- Forks: 1
- Language: Perl
- Description: A ChiliProject/Redmine plugin which makes configuring your own git hosting easy.
- Stars: 1
- Forks: 0
- Language: Ruby
- Description: Scripts to build my resume and supporting files
- Stars: 1
- Forks: 0
- Language: TeX
- Description: Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
- Stars: 1
- Forks: 0
- Language: C
- Description: Improved multi-sample transcript abundance estimates using adaptive priors
- Stars: 1
- Forks: 0
- Language: C++
- Description: Split a SAM file into nonoverlapping read groups
- Stars: 1
- Forks: 0
- Language: Python
- Description: Add colors to DNA and RNA sequences in terminal output
- Stars: 1
- Forks: 0
- Language: Perl
- Description: Perl module to provide a csv parser with options specified on the command-line
- Stars: 1
- Forks: 0
- Language: Perl
- Description: The source files for my thesis
- Stars: 1
- Forks: 1
- Language: TeX
- Description: Minor mode for visual feedback on some operations in Emacs.
- Stars: 1
- Forks: 0
- Language: Emacs Lisp
- Description: Automagically pair braces and quotes in emacs like TextMate
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: A curated list of amazingly awesome open source sysadmin resources inspired by Awesome PHP.
- Stars: 0
- Forks: 0
- Description: adjust for cell-type composition in 450K data using houseman's and other methods.
- Stars: 0
- Forks: 0
- Language: R
- Description: Cross-validation for multi-level lasso
- Stars: 0
- Forks: 0
- Language: R
- Description: Extract License, Author and Copyright from .pm file
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Safely read generated files from a Dist::Zilla dist
- Stars: 0
- Forks: 0
- Open Issues: 1
- Language: Perl
- Description: Plyr specialised for data frames: faster & with remote datastores
- Stars: 0
- Forks: 0
- Language: C++
- Description: Emacs Lisp Static Analyzer
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: Simple library for asynchronous processing in Emacs
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: Behavior-Driven Emacs Lisp Testing
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: noflet - nic's overriding flet, for fleting functions for the purpose of decorating them
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: Emacs mode for editing PEG files
- Stars: 0
- Forks: 0
- Description: Handle VIM modeline in Emacs
- Stars: 0
- Forks: 0
- Description: Opinionated Ert testing workflow
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: ESUP - Emacs Start Up Profiler
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.
- Stars: 0
- Forks: 0
- Language: R
- Description: Fork and clone Github projects from Emacs
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: Protect against clobbering user-writable files in Emacs
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: [emacs] highlight staged (quasi-quoted) expressions
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- http://caskroom.io
- Description: A CLI workflow for the administration of Mac applications distributed as binaries
- Stars: 0
- Forks: 0
- Language: Ruby
- Description: Speed improvements for Emacs ido-mode-el
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: losslessly convert images to pdf
- Stars: 0
- Forks: 0
- Language: Python
- Description: Generate Markdown-formatted READMEs from your Emacs Lisp file headers.
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: Flash the Emacs mode line instead of ringing the bell
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: Multi-Omics Factor Analysis
- Stars: 0
- Forks: 0
- Language: Python
- Description: Software program for checking sample matching for NGS data
- Stars: 0
- Forks: 0
- Language: Python
- Description: The MacOS X kernel extension, preventing sleep when you close the lid.
- Stars: 0
- Forks: 0
- Language: Objective-C
- Description: A package management tool for Emacs, built on Cask.
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: A multi format image optimizer that uses external tools
- Stars: 0
- Forks: 0
- Language: Python
- Description: Emacs minor mode for drawing multi-character tokens as Unicode glyphs (lambda -> λ). A configurable replacement for pretty-mode and the like.
- Stars: 0
- Forks: 0
- Language: Emacs Lisp
- Description: A collection various utility functions I have written for data analysis in R
- Stars: 0
- Forks: 0
- Language: R
- Description: for those times you want to make plots with candy-themed color schemes
- Stars: 0
- Forks: 0
- Description: Wrapper for R string functions to make them more consistent, simpler and easier to use
- Stars: 0
- Forks: 0
- Language: R
- Description: Collection of library stubs for Python, with static types
- Stars: 0
- Forks: 0
- Language: Python
- Description: A Python module for decorators, wrappers and monkey patching.
- Stars: 0
- Forks: 0
- Language: Python
- Description: Unobtrusively trim extraneous white-space *ONLY* in lines edited.
- Stars: 0
- Forks: 0
- Description: A portable, performant script to make rolling ZFS snapshots easy.
- Stars: 0
- Forks: 0
- Language: Shell
