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Last Update: 2022-10-03T02:21:42
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Shawn Rynearson

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Walrus Velociraptor Velociraptor 3 Python

Repositories

NICUWatch

  • Description: Public Version of the UCGD NICUWatch Pipeline
  • Stars: 2
  • Forks: 0
  • Language: Python

Salvo

  • Description: Slurm command and job launcher
  • Stars: 2
  • Forks: 0
  • Language: Perl

FQF

  • Description: FastQForward implementation of the of the UGP/UCGD pipeline
  • Stars: 1
  • Forks: 0
  • Open Issues: 1
  • Language: Perl

UGPp

  • Description: UGPp
  • Stars: 1
  • Forks: 0
  • Language: Perl

BioTools

  • Description: Collection of Bioinformatic tools.
  • Stars: 0
  • Forks: 0
  • Language: Perl

CalliNGS-NF

  • Description: GATK RNA-Seq Variant Calling in Nextflow
  • Stars: 0
  • Forks: 0
  • Language: Shell

clingen-data-model

  • Description: Documentation for data model of ClinGen
  • Stars: 0
  • Forks: 0
  • Language: Ruby

Clinomic

  • Description: Moose based perl libraray to create clinical genomic files from GVF, and VCF files.
  • Stars: 0
  • Forks: 0
  • Language: Perl

CVDO

  • Description: Collection of script and CVDO.sh used to build the Cardiovascular Disease Ontology
  • Stars: 0
  • Forks: 0
  • Language: Perl

eight-letters

  • Description: Eight Letters, Most Words
  • Stars: 0
  • Forks: 0
  • Language: Perl

go-vmc

  • Description: Go library and toolkit using the VMC Data model for exchanging sequence variation.
  • Stars: 0
  • Forks: 0

gobyexample

gqt

  • Description: A genotype query interface.
  • Stars: 0
  • Forks: 0
  • Language: C

graphite

  • Description: Graphite - Graph-based variant adjudication
  • Stars: 0
  • Forks: 0
  • Language: C++

GVF-Variant

  • Description: Perl scripts to upload database with GVF, 1000Genome and Cosmic file
  • Stars: 0
  • Forks: 0
  • Language: Perl

Heimdall

  • Description: Package for the monitoring and administration of UGP-GNomEx and UGP/UCGD analysis pipelines.
  • Stars: 0
  • Forks: 0
  • Language: Perl 6

IOBO

  • Description: IOBO Images to Ontologies.
  • Stars: 0
  • Forks: 0
  • Language: Perl

jibe

  • Description: Simple validation tool used to compare two versions of a VCF file.
  • Stars: 0
  • Forks: 0
  • Language: Go

Rex

sarek

  • https://nf-co.re/sarek
  • Description: Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  • Stars: 0
  • Forks: 0

ServerTools

  • Description: Collection of scripts to help in server maintenance.
  • Stars: 0
  • Forks: 0
  • Language: Perl

VAAST-wiki

vcflib

vmccl

  • Description: Command line lightweight implementation of the VMC SHA-512 algorithm
  • Stars: 0
  • Forks: 0
  • Language: Go