Repositories
- Description: grep that đź’–s vim and DWIM
- Stars: 16
- Forks: 5
- Language: Perl
- Description: An archive of the original Multivalent tools circa 2006
- Stars: 12
- Forks: 3
- Description: Utilities for interacting with the Roku Soundbridge (and maybe other servers which talk RCP).
- Stars: 10
- Forks: 4
- Language: Perl
- Description: Flickr-style “fullscreen” (full viewport) click-to-zoom, mouse-to-pan for your own <img> tags
- Stars: 9
- Forks: 3
- Language: JavaScript
- Description: Versions of Perl shipped with Apple’s Mac OS X
- Stars: 7
- Forks: 1
- Open Issues: 2
- Language: Shell
- Description: Grep CPAN from the command-line using grep.cpan.me
- Stars: 4
- Forks: 1
- Open Issues: 5
- Language: Perl
- Description: Archive of Tom Christiansen's OSCON 2011 Perl Unicode talks
- Stars: 4
- Forks: 0
- Language: HTML
- Description: Download multiple MP3s from Amazon's Cloud Player with a single click, even on Linux
- Stars: 2
- Forks: 0
- Language: JavaScript
- Description: RHEL-compatible init.d script for beanstalkd, a simple, fast work queue.
- Stars: 2
- Forks: 0
- Language: Shell
- Description: Utilities that interface with Planworld
- Stars: 2
- Forks: 0
- Description: https://tsibley.net/provoke-the-privacy-badger/
- Stars: 2
- Forks: 0
- Language: HTML
- Description: Playing around with the idea of fully-functional VisiData sessions in your browser.
- Stars: 2
- Forks: 0
- Open Issues: 2
- Language: Python
- Description: easy access to any pastebin
- Stars: 1
- Forks: 1
- Language: Perl
- Description: This is a journal club talk I gave to the Mullins Lab on 20 Jan 2015.
- Stars: 1
- Forks: 0
- Description: Fast, easy, cross-platform copying of text and files to the clipboard
- Stars: 1
- Forks: 1
- Language: Shell
- Description: greps compose key chords so you can learn, or remember, how to type all those fun Unicode characters.
- Stars: 1
- Forks: 0
- Language: Shell
- Description: [Mirror] Dive Into Python 3 online book
- Stars: 1
- Forks: 0
- Language: JavaScript
- Description: perl library for parsing MIME messages
- Stars: 1
- Forks: 0
- Language: Perl
- Description: An envdir replacement improved for interactive use.
- Stars: 1
- Forks: 0
- Language: Shell
- Description: Structured metadata for your FASTA sequences.
- Stars: 1
- Forks: 0
- Description: Prune local git branches that are merged into master and no longer exist on the remote.
- Stars: 1
- Forks: 1
- Language: Shell
- Description: See Hiveminder headers as columns in your Thunderbird message list
- Stars: 1
- Forks: 0
- Language: JavaScript
- Description: Structural diff for JSON files
- Stars: 1
- Forks: 0
- Language: CoffeeScript
- Description: logwatch(8) overlay for including interesting events from Request Tracker
- Stars: 1
- Forks: 0
- Language: Perl
- Description: Net::LDAP::Server::Test
- Stars: 1
- Forks: 0
- Language: Perl
- Description: REDCap ♥ VisiData in this command-line tool for quick, ad-hoc interaction with REDCap's web API
- Stars: 1
- Forks: 0
- Language: Shell
- Description: Run code in your RStudio session from your terminal or favorite editor
- Stars: 1
- Forks: 0
- Language: Shell
- Description: My capturing and exploring the munincipal tree data of Somerville, Mass.
- Stars: 1
- Forks: 0
- Language: Perl
- Description: Text-mode interface for git — my fork which I run locally before my pull requests are merged back to Jonas
- Stars: 1
- Forks: 0
- Language: C
- Description: v is z for vim
- Stars: 1
- Forks: 0
- Language: Shell
- Description: The VisiData plugins I use, written both by me and others.
- Stars: 1
- Forks: 0
- Language: Python
- Description: make a wiki go!
- Stars: 1
- Forks: 0
- Language: Perl
- Description: List, filter, and edit XXX/TODO/FIXME remarks in a collection of files.
- Stars: 1
- Forks: 0
- Language: Python
- Description: My fork of "A code-searching tool similar to ack, but faster."
- Stars: 0
- Forks: 0
- Language: C
- Description: Simple message queue based on AnyEvent
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Lookup and display change logs of CPAN releases
- Stars: 0
- Forks: 1
- Language: Perl
- Description: App::CSV Perl module, csv command line tool
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Build recs pipelines in Perl instead of shell
- Stars: 0
- Forks: 0
- Language: Perl
- Description: distributed timetracking from the commandline
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Bot-prompted looking at Street View to find myself.
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Parse CIGAR strings and translate coordinates to/from reference/query
- Stars: 0
- Forks: 0
- Description: A developer’s lab notebook; what I’m doing and thinking about in https://github.com/blab.
- Stars: 0
- Forks: 0
- Language: Shell
- Description: An actionrole for Catalyst applications to match routes based on the value of HTTP Accept
- Stars: 0
- Forks: 0
- Language: Perl
- Description: The Elegant MVC Web Application Framework
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Testing out github's contributing features
- Stars: 0
- Forks: 1
- Language: Perl
- Description: Sketching out what a pipeline runner (for Make, SCons, Galaxy, etc) might look like — musings from my commute
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Python CLI tool and library for diffing CSV files
- Stars: 0
- Forks: 0
- Description: colored pretty-print of Perl data structures and objects
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Use Data::Printer for formatting Devel::REPL return values
- Stars: 0
- Forks: 1
- Language: Perl
- Description: My Devel::REPL preferences.
- Stars: 0
- Forks: 0
- Language: Perl
- Description: The Digest::SHA1 Perl module
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Provide a `dzil update` command to update generated files
- Stars: 0
- Forks: 1
- Language: Perl
- Description: Distributed Shell - fork of http://dsh.cvs.sourceforge.net/viewvc/dsh/ for bugfixes + features. This is NOT http://www.netfort.gr.jp/~dancer/software/dsh.html.en, which is written in C and works slightly differently. I only started using the Perl version because I was confused, but it also turns out to have just what I need. :-)
- Stars: 0
- Forks: 2
- Language: Perl
- Description: Learning dtrace out of necessity
- Stars: 0
- Forks: 0
- Language: D
- Description: Fork of gisle/encode-locale
- Stars: 0
- Forks: 0
- Language: Perl
- Description: A pure-Perl port of djb's envdir, for quick, no-thought portability
- Stars: 0
- Forks: 0
- Language: Perl
- Description: fatigue runs a given command but suppresses repeated errors. Pair it with chronic(1) as "chronic fatigue …" for some relief.
- Stars: 0
- Forks: 1
- Language: Shell
- Description: Improved File::ShareDir for Perl
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Who wrote all this code anyway?
- Stars: 0
- Forks: 0
- Language: Shell
- Description: Run eslint just on the files or lines you touched on your git branch.
- Stars: 0
- Forks: 0
- Language: Python
- Description: Quickly edit outstanding unstaged/staged changes in your git repo, or re-edit a previous commit's hunks
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Open the given repository, commit, or path on GitHub.
- Stars: 0
- Forks: 0
- Language: Python
- Description: Easily compose an email reply to a git commit
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Automatically performs an interactive rebase with the given commit selected for rewording.
- Stars: 0
- Forks: 0
- Language: Shell
- Description: Testing behaviour of GitHub Pages
- Stars: 0
- Forks: 0
- Description: Hash::Fold - flatten and unflatten nested hashrefs
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Working out some ideas that've been kicking around my head
- Stars: 0
- Forks: 0
- Language: JavaScript
- Description: It slices, dices, and makes julienne data! The talk I gave at YAPC::NA 2015.
- Stars: 0
- Forks: 0
- Description: A tiny interactive REPL (read-eval-print-loop) for the excellent jq program
- Stars: 0
- Forks: 0
- Language: Shell
- Description: HIV integration project
- Stars: 0
- Forks: 0
- Language: Python
- Description: A simple logwatch(8) configuration overlay for fetchmail
- Stars: 0
- Forks: 0
- Language: Makefile
- Description: making fetch happen for npm
- Stars: 0
- Forks: 0
- Description: My personal modifications to the "standard" Keyboardio Model 01 Firmware sketch.
- Stars: 0
- Forks: 0
- Language: C++
- Description: Standalone, extensible Perl module installer
- Stars: 0
- Forks: 0
- Language: Perl
- Description: An -OFun prototype of an Ultra Modern Perl 5
- Stars: 0
- Forks: 0
- Language: Scala
- Description: Writes stdin to a temporary file and passes the file to the specified command.
- Stars: 0
- Forks: 0
- Language: Shell
- Description: Easily install the NCBI Entrez Direct (EDirect) utilities
- Stars: 0
- Forks: 0
- Language: Go
- Description: Framebuffer as a network service
- Stars: 0
- Forks: 0
- Language: Shell
- https://docs.nextstrain.org/projects/cli/
- Description: The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
- Stars: 0
- Forks: 0
- Language: Python
- Description: The CPAN module Parse::CPAN::Packages::Fast
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Uses Log::Dispatchouli to configure the PSGI logger
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Set environment variables from the values of request headers
- Stars: 0
- Forks: 0
- Language: Perl
- Description: perldoc that works for modules you don't have installed
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Report the start time or age of a process on Linux (or anything with /proc)
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Find processes which have a library loaded, optionally only those with an out of date copy
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Python library for using AWS Cognito. With support for SRP.
- Stars: 0
- Forks: 0
- Description: A modern Python application packaging and distribution tool
- Stars: 0
- Forks: 0
- Description: commandline tools for slicing and dicing JSON records.
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Configuration for https://recs.pl
- Stars: 0
- Forks: 0
- http://redash.io/
- Description: Make Your Company Data Driven. Connect to any data source, easily visualize and share your data.
- Stars: 0
- Forks: 0
- Language: Python
- Description: rPython is http://rpython.r-forge.r-project.org. This is a clone of the Subversion repo available at http://r-forge.r-project.org/projects/rpython/. @cjgb is the primary author.
- Stars: 0
- Forks: 0
- Language: R
- Description: Shutter ♥ App::Nopaste - a Shutter upload plugin for App::Nopaste
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Software carpentry workshop at UW, January 2015
- Stars: 0
- Forks: 0
- Language: Perl
- Description: A clean & modern SQL data interface.
- Stars: 0
- Forks: 0
- Language: JavaScript
- Description: Case conversion library for camel case, snake case, etc. A Perl port of the Clojure library CamelSnakeKebab.
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Materials about Introductions in workshops for train the trainers
- Stars: 0
- Forks: 0
- Description: Extract tables from PDF files
- Stars: 0
- Forks: 0
- Language: Ruby
- Description: automatically filter all interpolation tokens in Template-Toolkit
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Fork to use JSON::MaybeXS
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Test RFC3339 timestamps are within a certain tolerance
- Stars: 0
- Forks: 0
- Language: Perl
- Description: Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
- Stars: 0
- Forks: 0
- Language: Python
- Description: Roll your own TopoJSON from NHDPlus.
- Stars: 0
- Forks: 0
- Language: JavaScript
- Description: Convert vagrant boxes to work with different providers
- Stars: 0
- Forks: 0
- Language: Ruby
- Description: Vega expression parser and code generator.
- Stars: 0
- Forks: 0
- Language: JavaScript
- Description: Perl port of WebMachine
- Stars: 0
- Forks: 0
- Language: Perl
- Description: We Write Perl — http://wewriteperl.com
- Stars: 0
- Forks: 0
- Language: JavaScript
- Description: This is a short talk I gave on GNU make, Makefiles, and parallel processing to the Mullins Lab Computational Biology Group.
- Stars: 0
- Forks: 0
- Language: Perl
- Description: The talk I gave at YAPC::NA 2013 in Austin, TX
- Stars: 0
- Forks: 0
- Language: HTML
- Description: Saves a Washington Trails Association hike "backpack" to Pinboard
- Stars: 0
- Forks: 0
- Language: Perl
